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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha : |
12/08/2016 |
Actualizado : |
02/01/2017 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Autor : |
LADO, B.; GONZÁLEZ BARRIOS, P.; QUINCKE, M.; SILVA, P.; GUTIÉRREZ, L. |
Afiliación : |
BETTINA LADO, Universidad de la República (UdelaR)/ Facultad de Agronomía; PABLO GONZÁLEZ BARRIOS, Universidad de la República (UdelaR)/ Facultad de Agronomía; MARTIN CONRADO QUINCKE WALDEN, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MARIA PAULA SILVA VILLELLA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; LUCIA GUTIÉRREZ, Universidad de la República (UdelaR)/ Facultad de Agronomía. |
Título : |
Modeling genotype x environment interaction for genomic selection with unbalanced data from a wheat breeding program. |
Fecha de publicación : |
2016 |
Fuente / Imprenta : |
Crop Science, 2016, v. 56, p. 1-15. OPEN ACCESS. |
DOI : |
http://dx.doi.org/10.2135/cropsci2015.04.0207 |
Idioma : |
Inglés |
Contenido : |
ABSTRACT.
Genomic selection (GS) has successfully been used in plant breeding to improve selection efficiency and reduce breeding time and cost. However, there is not a clear strategy on how to incorporate genotype ? environment interaction (GEI) to GS models. Increased prediction accuracy could be achieved using mixed models to exploit GEI by borrowing information from other environments. The objective of this work was to compare strategies to exploit GEI in GS using mixed models. Specifically, we compared strategies to
predict new genotypes by borrowing information from other environments modeling the correlation matrix across environments and to design sets of environments aiming for low GEI to predict genomic performance in new environments. We evaluated 1477 advanced wheat (Triticum aestivum L.) lines for yield in 35 location?year combinations genotyped with genotyping-bysequencing (GBS). Mixed models were used to obtain either overall or by-environment predictions for different sets of environments. Overall accuracy was high (0.5). Borrowing information from relatives evaluated in multiple environments and modeling the correlation matrix across environments was the best strategy to predict new
genotypes. On the other hand, the best strategy for predicting the performance of genotypes in new environments was either to predict across locations for single years or to predict within defined mega-environments (MEs) for any year or location. In summary, higher predictive ability was obtained by characterizing and by modeling GEI in the GS context.
© 2016. Crop Science Society of America, Inc. MenosABSTRACT.
Genomic selection (GS) has successfully been used in plant breeding to improve selection efficiency and reduce breeding time and cost. However, there is not a clear strategy on how to incorporate genotype ? environment interaction (GEI) to GS models. Increased prediction accuracy could be achieved using mixed models to exploit GEI by borrowing information from other environments. The objective of this work was to compare strategies to exploit GEI in GS using mixed models. Specifically, we compared strategies to
predict new genotypes by borrowing information from other environments modeling the correlation matrix across environments and to design sets of environments aiming for low GEI to predict genomic performance in new environments. We evaluated 1477 advanced wheat (Triticum aestivum L.) lines for yield in 35 location?year combinations genotyped with genotyping-bysequencing (GBS). Mixed models were used to obtain either overall or by-environment predictions for different sets of environments. Overall accuracy was high (0.5). Borrowing information from relatives evaluated in multiple environments and modeling the correlation matrix across environments was the best strategy to predict new
genotypes. On the other hand, the best strategy for predicting the performance of genotypes in new environments was either to predict across locations for single years or to predict within defined mega-environments (MEs) for any year or location. In summary, higher predictive ab... Presentar Todo |
Palabras claves : |
GENOMIC SELECTION; WHEAT. |
Thesagro : |
TRIGO. |
Asunto categoría : |
-- |
URL : |
http://dx.doi.org/10.2135/cropsci2015.04.0207
http://www.ainfo.inia.uy/digital/bitstream/item/5875/1/Lado-B.-2016.-Crop-Science.pdf
http://www.ainfo.inia.uy/digital/bitstream/item/5876/1/Lado-B.-2016.-Crop-Science-supplement.pdf
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Marc : |
LEADER 02297naa a2200217 a 4500 001 1055260 005 2017-01-02 008 2016 bl uuuu u00u1 u #d 024 7 $ahttp://dx.doi.org/10.2135/cropsci2015.04.0207$2DOI 100 1 $aLADO, B. 245 $aModeling genotype x environment interaction for genomic selection with unbalanced data from a wheat breeding program.$h[electronic resource] 260 $c2016 520 $aABSTRACT. Genomic selection (GS) has successfully been used in plant breeding to improve selection efficiency and reduce breeding time and cost. However, there is not a clear strategy on how to incorporate genotype ? environment interaction (GEI) to GS models. Increased prediction accuracy could be achieved using mixed models to exploit GEI by borrowing information from other environments. The objective of this work was to compare strategies to exploit GEI in GS using mixed models. Specifically, we compared strategies to predict new genotypes by borrowing information from other environments modeling the correlation matrix across environments and to design sets of environments aiming for low GEI to predict genomic performance in new environments. We evaluated 1477 advanced wheat (Triticum aestivum L.) lines for yield in 35 location?year combinations genotyped with genotyping-bysequencing (GBS). Mixed models were used to obtain either overall or by-environment predictions for different sets of environments. Overall accuracy was high (0.5). Borrowing information from relatives evaluated in multiple environments and modeling the correlation matrix across environments was the best strategy to predict new genotypes. On the other hand, the best strategy for predicting the performance of genotypes in new environments was either to predict across locations for single years or to predict within defined mega-environments (MEs) for any year or location. In summary, higher predictive ability was obtained by characterizing and by modeling GEI in the GS context. © 2016. Crop Science Society of America, Inc. 650 $aTRIGO 653 $aGENOMIC SELECTION 653 $aWHEAT 700 1 $aGONZÁLEZ BARRIOS, P. 700 1 $aQUINCKE, M. 700 1 $aSILVA, P. 700 1 $aGUTIÉRREZ, L. 773 $tCrop Science, 2016$gv. 56, p. 1-15. OPEN ACCESS.
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INIA Las Brujas (LB) |
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Registros recuperados : 62 | |
3. | | GUTIÉRREZ, L.; LADO, B.; GONZÁLEZ, P.; SILVA, P.; QUINCKE, M. Handling Genotype-By-Environment Interaction in Genomic Selection to Predict New Genotypes and New Environments. [P0814] In: International Plant & Animal Genome, Conference PAG XXIV, "The largest Ag-genomics Meeting in the World San Diego, CA, USA; January 9-13, 2016. [Abstract] .Tipo: Abstracts/Resúmenes |
Biblioteca(s): INIA Las Brujas. |
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5. | | PÉREZ, O.; VIEGA, L.; GUTIÉRREZ, L.; CASTRO, M. Post-anthesis water deficit in spring wheat: effects on yield components and relative water content. In: SEMINARIO INTERNACIONAL DE TRIGO, 2014, La Estanzuela, Colonia, UY. GERMÁN, S., et al. (Org.). 1914-2014, un siglo de mejoramiento de trigo en La Estanzuela: un valioso legado para el futuro: resúmenes; posters. La Estanzuela, Colonia, UY: INIA, 2014. p. 41.Biblioteca(s): INIA La Estanzuela. |
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6. | | PÉREZ, O.; VIEGA, L.; GUTIERREZ, L.; CASTRO, M. Post-anthesis water deficit in spring wheat: effects on yield components and relative water content. [Poster]. In: German, S.; Quincke, M.; Vázquez, D.; Castro, M.; Pereyra, S.; Silva, P.; García, A. (Eds.). Seminario Internacional "1914-2014: Un siglo de mejoramiento de trigo en La Estanzuela". Montevideo (UY): INIA, 2018. P.130. (INIA Serie Técnica; 241).Biblioteca(s): INIA La Estanzuela. |
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7. | | BORGES, A.; GONZÁLEZ-REYMUNDEZ, A.; ERNST, O.; CADENAZZI, M.; TERRA, J.A.; GUTIÉRREZ, L. Can spatial modeling substitute experimental design in agricultural experiments? Crop Science, 2018, v. 59, no. 1, p. 1-10. Article history: Accepted paper, posted 10/05/18. Published online December, 13. 2018.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Treinta y Tres. |
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8. | | PEREYRA, S.; GERMAN, S.; GONZÁLEZ, S.N.; CASTRO, A.; GAMBA, F.; GUTIERREZ, L. Advances in the integrated management of leaf blotches in Uruguay. In: International Workshop on Barley Leaf Diseases , 2o. Rabat, Morocco: The International Center for Agricultural Research in the Dry Areas (ICARDA), April 5-7, 2017. p. 46.Tipo: Abstracts/Resúmenes |
Biblioteca(s): INIA La Estanzuela. |
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9. | | GUTIÉRREZ, L.; BERBERIAN, N.; CAPETTINI, F.; GERMAN, S.; PEREYRA, S.; PÉREZ, C.; CASTRO, A. Disease resistance QTLs in barley germplasm from Latin America In: INTERNATIONAL ANIMAL AND PLANT GENOME CONFERENCE, 20., 2012, San Diego, CA, US. Posters: wheat, barley, oat, and related. P0350. [s.l.: INTL-PAG], 2012.Biblioteca(s): INIA La Estanzuela. |
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10. | | CAJARVILLE, C.; BRITOS, A.; ERRANDONEA, N.; GUTIÉRREZ, L.; COZZOLINO, D.; REPETTO, J.L. Diurnal changes in water-soluble carbohydrate concentration in lucerne and tall fescue in autumn and the effects on in vitro fermentation. Research Article. New Zealand Journal of Agricultural Research, 2015, v. 58, no.3, p. 281-291. Article history: Received 23 January 2014 // Accepted 5 February 2015.Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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11. | | PORTA, B.; CONDON, F.; BONNECARRERE, V.; GUTIÉRREZ, L.; FRANCO, J.; GALVÁN, G. Diversidad y estructura genética del germoplasma de maíz blanco dentad de Uruguay mediante microsatélites. [Resumen]. In: SIMPÓSIO DE RECURSOS GENÉTICOS PARA A AMÉRICA LATINA E CARIBE, 10., 2015, Bento Gonçalves. Recursos genéticos no século 21: de Vavilov a Svalbard. Anais... [s.l.]: Sociedade Brasileira de Recursos Genéticos, 2015. p.65. Agradecimientos: Comisión Sectorial de Investigación Científica, CSIC - UdelaR, Uruguay.Tipo: Abstracts/Resúmenes |
Biblioteca(s): INIA Las Brujas. |
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12. | | GUTIERREZ, L.; BORGES, A.; QUERO, G.; GONZALEZ-REYMUNDEZ, A.; BERRO, I.; LADO, B.; CASTRO, A. Biostatistical tools for plant breeding in the genomics era. In: German, S.; Quincke, M.; Vázquez, D.; Castro, M.; Pereyra, S.; Silva, P.; García, A. (Eds.). Seminario Internacional "1914-2014: Un siglo de mejoramiento de trigo en La Estanzuela". Montevideo (UY): INIA, 2018. p.46-57. (INIA Serie Técnica; 241).Tipo: Capítulo en Libro Técnico-Científico |
Biblioteca(s): INIA La Estanzuela. |
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13. | | LADO,B.; BATTENFIELD, S.; POLAND, J.; QUINCKE, M.; SILVA, P.; GUTIÉRREZ, L. Comparación de metodologías de predicción de cruzamientos para rendimiento en trigo. MV 14 - COMUNICACIONES LIBRES - MV. MEJORAMIENTO VEGETAL In: JOURNAL OF BASIC & APPLIED GENETICS, 2016, Vol.27, Iss. 1 (Supp.). XVI LATIN AMERICAN CONGRESS OF GENETICS, IV CONGRESS OF THE URUGUAYAN SOCIETY OF GENETICS, XLIX ANNUAL MEETING OF THE GENETICS SOCIETY OF CHILE, XLV ARGENTINE CONGRESS OF GENETICS, 9-12 October 2016. PROCEEDINGS. Montevideo (Uruguay): SAG, 2016 p. 287.Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA La Estanzuela. |
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14. | | REBOLLO, I.; AGUILAR, I.; PÉREZ DE VIDA, F.; MOLINA, F.; GUTIÉRREZ, L.; ROSAS, J.E. Genotype by environment interaction characterization and its modeling with random regression to climatic variables in two rice breeding populations. Original article. Crop Science. 2023, Volume 63, Issue 4, Pages 2220-2240. https://doi.org/10.1002/csc2.21029 -- OPEN ACCESS. Article history: Received 21 November 2022, Accepted 10 May 2023, Published online 16 June 2023. -- Correspondence: Rosas, J.E.; INIA, Estación Experimental Treinta y Tres, Road 8 km 281, Treinta y Tres, Uruguay; email:jrosas@inia.org.uy...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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15. | | QUERO, C.; FERNANDEZ, S.; BRANDARIZ, S.B.; SIMONDI, S.; GUTIÉRREZ, L. Herramientas de análisis y visualización genómica. MV 10 - COMUNICACIONES LIBRES - MV. MEJORAMIENTO VEGETAL In: JOURNAL OF BASIC & APPLIED GENETICS, 2016, Vol.27, Iss. 1 (Supp.). XVI LATIN AMERICAN CONGRESS OF GENETICS, IV CONGRESS OF THE URUGUAYAN SOCIETY OF GENETICS, XLIX ANNUAL MEETING OF THE GENETICS SOCIETY OF CHILE, XLV ARGENTINE CONGRESS OF GENETICS, 9-12 October 2016. PROCEEDINGS. Montevideo (Uruguay): SAG, 2016. p. 285Tipo: Trabajos en Congresos/Conferencias |
Biblioteca(s): INIA Las Brujas. |
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18. | | BERBERIAN, N.; CASTRO, A.; CAPETTINI, F.; FROS, D.; GERMAN, S.; PEREYRA, S.; PEREZ, C.; GUTIÉRREZ, L. Modelos mixtos para la identificación de QTL para enfermedades en cebada a traves de mapeo asociativo. In: REUNIÓN CIENTIFICA DEL GRUPO ARGENTINO DE BIOMETRÍA, 16., 2011, Salta, AR. Libro de resúmenes: modelos lineales y generalizados mixtos. La Plata: GAB, 2011. p. 108.Tipo: Abstracts/Resúmenes |
Biblioteca(s): INIA La Estanzuela. |
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19. | | GONZÁLEZ BARRIOS, P.; PÉREZ, O.; CASTRO, M.; CERETTA, S.; VILARO, D.; GUTIÉRREZ, L. Identificación de limitantes a la expresión del potencial de rendimiento en girasol en Uruguay mediante GGE biplots y PLS regression. In: IV Encuentro Iberoamericano de Biometría; 4o. y XVIII Reunión Científica del GAB, 17o., Setiembre 2013, Mar del Plata ,ROMERO, M.C.; MARINELLI, C.; CEPEDA, R. Eds., La Plata, Bs As, Argentina: Grupo Argentino de Biometría. p. 236-239Tipo: Abstracts/Resúmenes |
Biblioteca(s): INIA La Estanzuela. |
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20. | | LADO, B.; VÁZQUEZ, D.; QUINCKE, M.; SILVA, P.; AGUILAR, I.; GUTIÉRREZ, L. Resource allocation optimization with multi-trait genomic prediction for bread wheat (Triticum aestivum L.) baking quality. [Original article]. Theoretical and Applied Genetics, 1 December 2018, Volume 131, Issue 12, pp. 2719-2731. OPEN ACCESS. Article history: Received: 29 January 2018 / Accepted: 10 September 2018 / Published online: 19 September 2018.
Supplementary materials.
Acknowledgements: We express our appreciation for the effort of the technical personnel of INIA La...Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
Biblioteca(s): INIA Las Brujas. |
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Registros recuperados : 62 | |
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